STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CASTOR1Cytosolic arginine sensor for mTORC1 subunit 1. (332 aa)    
Predicted Functional Partners:
mios
Missing oocyte, meiosis regulator, homolog (Drosophila).
    
 0.985
seh1l
SEH1-like (S. cerevisiae); Belongs to the WD repeat SEC13 family.
    
 0.978
wdr24
WD repeat domain 24.
    
 0.973
wdr59
WD repeat domain 59.
    
 0.973
sec13
SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family.
    
 0.965
castor2
Cytosolic arginine sensor for mTORC1 subunit 2.
  
  
 
0.901
mettl25
Methyltransferase like 25.
   
 0.831
parp16
Poly [ADP-ribose] polymerase.
   
 0.709
c23h12orf66
Si:ch211-125a15.1.
     
 0.704
itfg2
Integrin alpha FG-GAP repeat containing 2.
     
 0.704
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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