Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lrrc4cLeucine rich repeat containing 4C, genome duplicate b. (631 aa)    
Predicted Functional Partners:
ntng1
Netrin g1a.
   
 0.959
LOC105357770
Vav 3 guanine nucleotide exchange factor b.
   
 0.959
gphb5
Glycoprotein hormone subunit beta 5.
      
 0.610
wdr89
WD repeat domain 89.
      
 0.610
ophn1
Oligophrenin 1.
      
 0.610
ttc17
Tetratricopeptide repeat domain 17.
      
 0.608
tnfaip8l3
Tumor necrosis factor, alpha-induced protein 8-like 3.
      
 0.506
H2LCJ5_ORYLA
Gliomedin.
    
 
 0.502
api5
Apoptosis inhibitor 5.
      
 0.501
ap4e1
AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.
      
 0.500
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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