STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slco2a1Solute carrier organic anion transporter family member. (625 aa)    
Predicted Functional Partners:
atp10a
Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.
      
 0.628
scly
Selenocysteine lyase.
      
 0.618
cog4
Component of oligomeric golgi complex 4.
      
 0.592
LOC101167359
LIM domain containing preferred translocation partner in lipoma.
      
 0.589
gpr17
G protein-coupled receptor 17; Belongs to the G-protein coupled receptor 1 family.
      
 0.578
dot1l
Histone-lysine N-methyltransferase, H3 lysine-79 specific.
      
 0.491
oca2
CitMHS domain-containing protein.
      
 0.455
sox14
SRY-box containing gene 14.
   
  
 0.432
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.