Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
slco2a1Solute carrier organic anion transporter family member. (625 aa)    
Predicted Functional Partners:
cog4
Component of oligomeric golgi complex 4.
      
 0.671
atp10a
Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.
      
 0.658
gpr17
G protein-coupled receptor 17; Belongs to the G-protein coupled receptor 1 family.
      
 0.616
scly
Selenocysteine lyase.
      
 0.614
polr3gl
Uncharacterized protein.
      
 0.614
LOC101167359
LIM domain containing preferred translocation partner in lipoma.
      
 0.581
hpgd
15-hydroxyprostaglandin dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
  
 0.569
LOC101160739
Isotocin; Belongs to the vasopressin/oxytocin family.
     
  0.514
oxt
Uncharacterized protein; Belongs to the vasopressin/oxytocin family.
     
  0.514
H2MN31_ORYLA
ATP-binding cassette, sub-family A (ABC1), member 12.
      
 0.508
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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