Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
calhm3Calcium homeostasis modulator 3. (329 aa)    
Predicted Functional Partners:
LOC101166974
Pannexin; Structural component of the gap junctions and the hemichannels; Belongs to the pannexin family.
      
 0.748
LOC101165456
Pannexin; Structural component of the gap junctions and the hemichannels; Belongs to the pannexin family.
      
 0.748
hand2
Heart and neural crest derivatives expressed 2.
   
  
 0.579
HAND1
Heart and neural crest derivatives expressed 1.
   
  
 0.522
txn
Thioredoxin; Belongs to the thioredoxin family.
      
 0.498
tspo
Translocator protein.
      
 0.498
OTOP1
Otopetrin 1.
   
  
 0.480
ano6
Anoctamin.
      
 0.464
cd36
CD36 molecule (thrombospondin receptor); Belongs to the CD36 family.
      
 0.464
vcl
Vinculin b.
      
 0.453
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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