STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HNRNPUL1Heterogeneous nuclear ribonucleoprotein U like 1. (834 aa)    
Predicted Functional Partners:
hnrnpk
Heterogeneous nuclear ribonucleoprotein K.
   
 0.745
hnrnpm
Heterogeneous nuclear ribonucleoprotein M.
   
 0.745
LOC101167466
Heterogeneous nuclear ribonucleoprotein K, like.
   
 0.745
polr2a
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.696
LOC101162697
Serine and arginine rich splicing factor 1a.
   
 0.689
LOC101171767
Uncharacterized protein.
   
 0.689
polr2f
Polymerase (RNA) II (DNA directed) polypeptide F.
     
 0.684
LOC101166731
Uncharacterized protein.
   
 0.669
HNRNPLL
Heterogeneous nuclear ribonucleoprotein L like.
   
 0.669
hnrnpl
Heterogeneous nuclear ribonucleoprotein L.
   
 0.669
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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