STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101164564Nipsnap homolog 1 (C. elegans). (272 aa)    
Predicted Functional Partners:
mthfsd
Methenyltetrahydrofolate synthetase domain containing.
   
    0.756
smim12
Small integral membrane protein 12.
   
    0.730
sqstm1
Sequestosome 1.
    
 
 0.699
LOC101155936
NBR1 autophagy cargo receptor b.
    
 
 0.630
nbr1
NBR1 autophagy cargo receptor a.
    
 
 0.630
nudcd1
NudC domain containing 1.
   
   0.616
snu13
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
  
 0.613
nf2
Neurofibromin 2a (merlin).
 
    
 0.607
OSBPL10
Oxysterol-binding protein; Belongs to the OSBP family.
   
  0.606
osbpl11
Oxysterol-binding protein; Belongs to the OSBP family.
   
  0.606
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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