Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
usp4Ubiquitin specific peptidase 4 (proto-oncogene); Belongs to the peptidase C19 family. (1037 aa)    
Predicted Functional Partners:
sart3
Spliceosome associated factor 3, U4/U6 recycling protein.
    
 
 0.917
traf6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.907
ubc
Ubiquitin B.
    
 0.877
usp14
Ubiquitin carboxyl-terminal hydrolase.
    
 
 0.867
rps27a
Ribosomal protein S27a.
    
 0.743
prpf3
PRP3 pre-mRNA processing factor 3 homolog (yeast).
   
 
 0.740
trip12
Thyroid hormone receptor interactor 12.
   
 
 0.711
psmd14
Proteasome 26S subunit, non-ATPase 14.
   
 
 0.699
usp10
Ubiquitin carboxyl-terminal hydrolase.
    
 0.699
LOC101164496
Ubiquitin specific peptidase 28; Belongs to the peptidase C19 family.
   
 0.697
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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