STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
usp4Ubiquitin specific peptidase 4 (proto-oncogene); Belongs to the peptidase C19 family. (1037 aa)    
Predicted Functional Partners:
sart3
Spliceosome associated factor 3, U4/U6 recycling protein.
    
 
 0.826
ubc
Ubiquitin B.
    
 0.802
traf6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.743
usp14
Ubiquitin carboxyl-terminal hydrolase.
   
 
 0.670
usp30
Ubiquitin carboxyl-terminal hydrolase.
   
 
 0.655
usp10
Ubiquitin carboxyl-terminal hydrolase.
    
0.653
LOC101164496
Ubiquitin specific peptidase 28; Belongs to the peptidase C19 family.
   
 0.644
LOC101158223
Insulin-degrading enzyme; Belongs to the peptidase M16 family.
 
 
    0.586
mrps9
Mitochondrial ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.579
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.579
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.