STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ncapd3Non-SMC condensin II complex, subunit D3. (1403 aa)    
Predicted Functional Partners:
ncapg2
Non-SMC condensin II complex, subunit G2.
   
 0.996
smc2
Structural maintenance of chromosomes protein.
   
 0.996
ncaph2
Non-SMC condensin II complex, subunit H2.
   
 0.994
smc4
Structural maintenance of chromosomes protein.
   
 0.986
Ncapd2
Uncharacterized protein.
   
  
 0.875
ncapg
Non-SMC condensin I complex, subunit G.
   
  
 0.865
smc3
Structural maintenance of chromosomes protein.
   
 0.824
RBM20
RNA binding motif protein 20.
   
 0.822
ncaph
Condensin complex subunit 2; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes.
   
 
 0.809
smc5
Structural maintenance of chromosomes 5.
   
 0.808
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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