STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
borcs5BLOC-1 related complex subunit 5. (198 aa)    
Predicted Functional Partners:
borcs6
Si:dkey-72l14.4.
    
 0.888
borcs7
BLOC-1 related complex subunit 7.
    
 0.884
snapin
SNAP associated protein.
   
 0.876
borcs8
BLOC-1 related complex subunit 8.
    
 0.864
kxd1
KxDL motif containing 1.
    
 0.848
bloc1s2
Biogenesis of lysosomal organelles complex-1, subunit 2.
     
 0.840
bloc1s1
Biogenesis of lysosomal organelles complex-1, subunit 1.
    
 
 0.759
pfdn4
Prefoldin subunit 4; Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins; Belongs to the prefoldin subunit beta family.
      
 0.559
pcmt1
Protein-L-isoaspartate O-methyltransferase.
   
  
 0.550
LOC101172859
Protein-L-isoaspartate O-methyltransferase.
   
  
 0.481
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.