Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101160748Hyaluronan and proteoglycan link protein 1b. (353 aa)    
Predicted Functional Partners:
LOC101165132
Uncharacterized protein.
   
 0.725
LOC101156813
Aggrecan b.
   
 0.725
LOC101162075
Elastin microfibril interfacer 2a.
    
 0.523
prdm5
Zinc finger protein.
    
 0.508
H2MHD4_ORYLA
Si:ch211-160f23.7.
      
 0.504
LOC101171095
Zmp:0000000846.
   
 0.493
LOC101170815
Tenascin C.
   
 0.493
lum
Lumican.
    
 0.491
tnr
Tenascin R (restrictin, janusin).
   
 0.438
LOC101165399
Uncharacterized protein.
 
  
  0.410
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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