STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101161037Uncharacterized protein. (1400 aa)    
Predicted Functional Partners:
LOC101172611
Chromo domain-containing protein.
    
 0.724
LOC101160413
Chromobox homolog 8a (Pc class homolog, Drosophila).
    
 0.635
cbx8
Chromobox homolog 8b.
    
 0.635
LOC101160166
Chromobox homolog 4 (Pc class homolog, Drosophila).
    
 0.620
cbx4
Chromobox 4.
    
 0.620
H2LSI7_ORYLA
Bmi1 polycomb ring finger oncogene 1a.
    
 0.618
pcgf2
RING-type domain-containing protein.
    
 0.618
rnf2
Ring finger protein 2.
    
 0.589
RING1
Ring finger protein 1.
    
 0.589
LOC101175061
Scm polycomb group protein like 2.
    
 0.554
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.