Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MID1IP1MID1 interacting protein 1. (141 aa)    
Predicted Functional Partners:
zbtb8a
Zinc finger and BTB domain containing 8A.
      
 0.701
ginm1
Glycoprotein integral membrane 1.
      
 0.692
tatdn2
TatD DNase domain containing 2.
      
 0.587
haus8
Uncharacterized protein.
      
 0.566
thrsp
Thyroid hormone responsive.
    
  0.561
SYDE1
Synapse defective Rho GTPase homolog 1.
      
 0.514
LOC101161191
Family with sequence similarity 113.
      
 0.512
adprhl1
ADP-ribosylhydrolase like 1.
      
 0.464
LOC101174956
Progestin and adipoQ receptor family member IVb.
      
 0.464
adprh
ADP-ribosylarginine hydrolase.
      
 0.464
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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