Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101162269Tetraspanin. (250 aa)    
Predicted Functional Partners:
pick1
Protein interacting with prkca 1.
    
 0.830
gria2
Uncharacterized protein.
   
 0.551
prrg1
Proline rich Gla (G-carboxyglutamic acid) 1.
    
 
 0.499
LOC101169288
Tetraspanin 31; Belongs to the tetraspanin (TM4SF) family.
   
  
 0.476
LOC101162621
Neurofibromin 2b (merlin).
    
 
 0.466
nf2
Neurofibromin 2a (merlin).
    
 
 0.466
ggcx
Gamma-glutamyl carboxylase.
    
   0.463
slc31a2
Solute carrier family 31 member 2.
      
 0.462
LOC101155741
Uncharacterized protein.
   
  
 0.433
LOC101173373
Glycoprotein M6Aa.
   
  
 0.433
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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