STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rnf141Ring finger protein 141. (276 aa)    
Predicted Functional Partners:
stom
Stomatin.
      
 0.745
cenpm
Proliferation associated nuclear element.
   
  
 0.736
samd11
Sterile alpha motif domain containing 11.
      
 0.689
trip12
Thyroid hormone receptor interactor 12.
     
 0.630
LOC101156635
Uncharacterized protein.
      
 0.575
rnf14
RBR-type E3 ubiquitin transferase.
     
 0.556
LOC101160308
Serpin peptidase inhibitor, clade B (ovalbumin), member 1; Belongs to the serpin family.
      
 0.537
atg7
ATG7 autophagy related 7 homolog (S. cerevisiae).
     
 0.527
LOC101161031
Choline kinase alpha.
      
 0.526
noc2l
NOC2-like nucleolar associated transcriptional repressor.
      
 0.520
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.