STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atl2GB1/RHD3-type G domain-containing protein. (582 aa)    
Predicted Functional Partners:
pbrm1
Polybromo 1.
      
 0.827
spast
Spastin; Belongs to the AAA ATPase family.
   
 
 0.656
reep1
Receptor expression-enhancing protein.
    
 
 0.642
nisch
Nischarin.
      
 0.608
LOC101163837
Reticulon.
    
 
 0.602
LOC101161432
Reticulon.
    
 
 0.578
LOC101170222
Reticulon.
    
 
 0.546
rtn1
Reticulon.
    
 
 0.546
ENSORLP00000045485
Reticulon.
    
 
 0.546
fmr1
Fragile X mental retardation 1.
    
   0.504
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.