STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101169440Uncharacterized protein. (822 aa)    
Predicted Functional Partners:
SUGP1
SURP and G-patch domain containing 1.
   
0.732
u2af2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 
 0.707
ddx10
RNA helicase.
    
 0.629
dhx38
DEAH (Asp-Glu-Ala-His) box polypeptide 38.
   
 0.618
nol6
Nucleolar protein 6.
   
 
 0.611
ddx18
RNA helicase.
    
 0.602
gpkow
G patch domain and KOW motifs.
   
 
 0.598
tefm
UTP6 small subunit processome component.
    
 
 0.592
bysl
Bystin-like.
    
 
 0.581
nom1
Nucleolar protein with MIF4G domain 1.
   
   0.579
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.