STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ryr1Ryanodine receptor 1b (skeletal). (4677 aa)    
Predicted Functional Partners:
ENSORLP00000041349
Ins145_P3_rec domain-containing protein.
 
     0.920
LOC101171376
Asp-B-Hydro_N domain-containing protein.
   
 0.910
LOC101168676
CD38 molecule.
     
 0.900
LOC101168159
Uncharacterized protein.
     
 0.900
LOC101168658-2
Uncharacterized protein.
     
 0.900
fkbp1b
Peptidylprolyl isomerase.
    
 0.859
LOC101156606
Asp-B-Hydro_N domain-containing protein.
   
 
 0.858
LOC101156407
Peptidylprolyl isomerase.
    
 0.816
ENSORLP00000033268
Ins145_P3_rec domain-containing protein.
 
     0.747
LOC101163627
Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.
   
 0.745
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.