STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vdralphaUncharacterized protein. (421 aa)    
Predicted Functional Partners:
ncor1
Nuclear receptor corepressor 1.
    
 0.725
ncor2
Nuclear receptor corepressor 2.
    
 0.725
med1
Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
    
 0.666
LOC101172325
Cytochrome P450, family 27, subfamily B, polypeptide 1; Belongs to the cytochrome P450 family.
    
 0.658
fgf23
Fibroblast growth factor 23; Belongs to the heparin-binding growth factors family.
   
 
 0.658
LOC101164878
Cytochrome P450, family 2, subfamily R, polypeptide 1; Belongs to the cytochrome P450 family.
   
 0.648
LOC100125506
Retinoid x receptor, beta b.
   
 0.639
LOC100125533
Uncharacterized protein.
   
 0.639
RXRB
Uncharacterized protein.
   
 0.639
rxra
Retinoid X receptor, alpha a.
   
 0.639
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.