STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vsig10Uncharacterized protein. (366 aa)    
Predicted Functional Partners:
tepsin
TEPSIN adaptor related protein complex 4 accessory protein.
   
  
 0.562
ankrd13d
Ankyrin repeat domain 13 family, member D.
      
 0.560
ttc17
Tetratricopeptide repeat domain 17.
      
 0.558
nprl2
NPR2 like, GATOR1 complex subunit.
      
 0.459
shq1
SHQ1, H/ACA ribonucleoprotein assembly factor.
      
 0.405
c12h9orf16
Expressed sequence BC139872.
   
  
 0.404
lrrc73
Leucine rich repeat containing 73.
      
 0.400
polr3d
Polymerase (RNA) III (DNA directed) polypeptide D.
      
 0.400
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.