STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
klhl30Kelch-like family member 30. (599 aa)    
Predicted Functional Partners:
nanp
N-acetylneuraminic acid phosphatase.
   
 
 0.593
prpf40a
PRP40 pre-mRNA processing factor 40 homolog A.
    
 0.572
nif3l1
NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae).
   
  
 0.558
bbs9
Bardet-Biedl syndrome 9.
    
 0.537
WDR33
WD repeat domain 33.
    
 0.536
ankrd16
Ankyrin repeat domain 16.
   
  0.495
bbs7
Bardet-Biedl syndrome 7.
    
 0.494
ttc8
Tetratricopeptide repeat domain 8.
    
 0.492
klhl21
Kelch-like family member 21.
  
 
0.468
mib2
Mindbomb E3 ubiquitin protein ligase 2.
    
 0.468
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.