Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
klhl30Kelch-like family member 30. (599 aa)    
Predicted Functional Partners:
prpf40a
PRP40 pre-mRNA processing factor 40 homolog A.
     
 0.741
nif3l1
NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae).
   
  
 0.731
WDR33
WD repeat domain 33.
    
 0.710
nanp
N-acetylneuraminic acid phosphatase.
   
 
 0.657
dipk1c
Divergent protein kinase domain 1C.
      
 0.574
ubxn7
UBX domain protein 7.
    
  0.551
bbs9
Bardet-Biedl syndrome 9.
    
 0.487
klhl3
Kelch-like family member 3.
    
 0.473
LOC101168447
BTB domain-containing protein.
    
 0.473
KLHL12
BTB domain-containing protein.
    
 0.473
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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