STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101170323TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (584 aa)    
Predicted Functional Partners:
tradd
Tnfrsf1a-associated via death domain.
    
 0.986
LOC101161312
Zgc:153759.
    
 0.974
ripk2
Receptor-interacting serine-threonine kinase 2.
   
 0.957
tank
TRAF family member-associated NFKB activator.
    
 0.940
LOC101172593
Tumor necrosis factor a (TNF superfamily, member 2).
   
 0.921
myd88
Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response.
    
 0.918
LOC101158892
Interferon regulatory factor 3.
   
 0.917
tbk1
TANK-binding kinase 1.
   
 0.917
LOC101172600
Baculoviral IAP repeat containing 2.
   
 0.914
traf6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.907
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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