STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101170323TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (584 aa)    
Predicted Functional Partners:
tradd
Tnfrsf1a-associated via death domain.
    
 0.985
ripk2
Receptor-interacting serine-threonine kinase 2.
   
 0.954
LOC101161312
Zgc:153759.
    
 0.951
LOC100301586
CD40 molecule, TNF receptor superfamily member 5.
   
 0.911
traf6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
0.909
tank
TRAF family member-associated NFKB activator.
    
 0.907
LOC101161557
TNFR-Cys domain-containing protein.
     
  0.900
tbk1
TANK-binding kinase 1.
   
 0.896
LOC101172600
Baculoviral IAP repeat containing 2.
   
 0.885
LOC101166883
X-linked inhibitor of apoptosis.
   
 0.848
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.