STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cul4bCullin 4B; Belongs to the cullin family. (845 aa)    
Predicted Functional Partners:
ddb1
Damage-specific DNA binding protein 1.
   
 0.985
dcaf11
DDB1- and CUL4-associated factor 11; May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex; Belongs to the WD repeat LEC14B family.
    
 0.973
crbn
Cereblon.
    
 0.972
ddb2
Damage-specific DNA binding protein 2.
    
 0.970
LOC101156715
DDB1 and CUL4 associated factor 8.
   
 0.964
dda1
DET1 and DDB1 associated 1.
    
 0.963
ercc8
Excision repair cross-complementation group 8.
    
 0.962
wdtc1
WD and tetratricopeptide repeats 1.
    
 0.959
dtl
Denticleless E3 ubiquitin protein ligase homolog (Drosophila).
    
 0.956
DCAF1
DDB1 and CUL4 associated factor 1.
   
 0.952
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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