STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101163430Interferon regulatory factor. (293 aa)    
Predicted Functional Partners:
mdm2
MDM2 proto-oncogene.
    
 0.937
irf2
Interferon regulatory factor.
  
0.803
myd88
Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response.
   
 0.752
LOC101160197
E1A binding protein p300 a.
    
 0.712
LOC101168870
E1A binding protein p300 b.
    
 0.712
spi1
Spi-1 proto-oncogene b.
   
 
 0.672
stub1
STIP1 homology and U-Box containing protein 1.
    
 
 0.648
LOC101154761
Signal transducer and activator of transcription.
   
 0.643
LOC101173390
Interferon regulatory factor 10.
  
0.617
LOC101173855
Signal transducer and activator of transcription.
   
 0.616
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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