STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dnajc27DnaJ (Hsp40) homolog, subfamily C, member 27. (272 aa)    
Predicted Functional Partners:
LOC105357787
Zgc:85722.
    
   0.897
dnajc9
DnaJ (Hsp40) homolog, subfamily C, member 9.
    
 0.782
dnajc25
DnaJ (Hsp40) homolog, subfamily C, member 25.
    
 0.766
blzf1
Basic leucine zipper nuclear factor 1.
    
 0.756
dnajc10
DnaJ (Hsp40) homolog, subfamily C, member 10.
   
 0.753
dnajc1
DnaJ (Hsp40) homolog, subfamily C, member 1.
      
 0.737
dnajc8
DnaJ (Hsp40) homolog, subfamily C, member 8.
      
 0.732
dnajc28
DnaJ (Hsp40) homolog, subfamily C, member 28.
      
 0.693
dnajc11
DnaJ (Hsp40) homolog, subfamily C, member 11a.
    
 0.691
rabggtb
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
 0.688
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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