Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101163233Uncharacterized protein. (626 aa)    
Predicted Functional Partners:
atf7ip2
Fibronectin type-III domain-containing protein.
   
 0.926
atf7ip
Activating transcription factor 7 interacting protein.
   
 0.926
trim33
Tripartite motif containing 33.
   
 0.850
LOC101161205
Uncharacterized protein.
   
 0.850
arl14ep
ADP-ribosylation factor-like 14 effector protein.
    
 
 0.838
LOC101164979
Transcription activation suppressor b.
   
 0.766
mphosph8
Uncharacterized protein.
    
 0.757
LOC111948975
Uncharacterized protein.
   
 0.747
chaf1a
Chromatin assembly factor 1, subunit A (p150).
    
 
 0.708
camkmt
Calmodulin-lysine N-methyltransferase.
     
 0.706
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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