LOC101154762 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC101154762

Coagulation factor VII, like. (429 aa)

Predicted Functional Partners:

LOC101170246

0.791

stil

0.760

f3

0.696

LOC101164095

0.685

LOC101174928

0.635

LOC101166425

0.635

LOC101174546

0.614

LOC101175393

0.587

met

0.587

mst1r

0.587

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101154762	LOC101164095	ENSORLP00000001424	ENSORLP00000010368	Coagulation factor VII, like.	Uncharacterized protein.	0.685
LOC101154762	LOC101166425	ENSORLP00000001424	ENSORLP00000030665	Coagulation factor VII, like.	Coagulation factor V; Belongs to the multicopper oxidase family.	0.635
LOC101154762	LOC101170246	ENSORLP00000001424	ENSORLP00000033975	Coagulation factor VII, like.	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	0.791
LOC101154762	LOC101174546	ENSORLP00000001424	ENSORLP00000018111	Coagulation factor VII, like.	Uncharacterized protein.	0.614
LOC101154762	LOC101174928	ENSORLP00000001424	ENSORLP00000003708	Coagulation factor VII, like.	Coagulation factor VIII, procoagulant component; Belongs to the multicopper oxidase family.	0.635
LOC101154762	LOC101175393	ENSORLP00000001424	ENSORLP00000004366	Coagulation factor VII, like.	Macrophage stimulating 1 receptor a.	0.587
LOC101154762	f3	ENSORLP00000001424	ENSORLP00000005009	Coagulation factor VII, like.	Coagulation factor IIIa.	0.696
LOC101154762	met	ENSORLP00000001424	ENSORLP00000024532	Coagulation factor VII, like.	MET proto-oncogene, receptor tyrosine kinase.	0.587
LOC101154762	mst1r	ENSORLP00000001424	ENSORLP00000034975	Coagulation factor VII, like.	Macrophage stimulating 1 receptor b.	0.587
LOC101154762	stil	ENSORLP00000001424	ENSORLP00000017607	Coagulation factor VII, like.	SERPIN domain-containing protein; Belongs to the serpin family.	0.760
LOC101164095	LOC101154762	ENSORLP00000010368	ENSORLP00000001424	Uncharacterized protein.	Coagulation factor VII, like.	0.685
LOC101164095	LOC101170246	ENSORLP00000010368	ENSORLP00000033975	Uncharacterized protein.	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	0.812
LOC101164095	LOC101174546	ENSORLP00000010368	ENSORLP00000018111	Uncharacterized protein.	Uncharacterized protein.	0.679
LOC101164095	stil	ENSORLP00000010368	ENSORLP00000017607	Uncharacterized protein.	SERPIN domain-containing protein; Belongs to the serpin family.	0.485
LOC101166425	LOC101154762	ENSORLP00000030665	ENSORLP00000001424	Coagulation factor V; Belongs to the multicopper oxidase family.	Coagulation factor VII, like.	0.635
LOC101166425	LOC101170246	ENSORLP00000030665	ENSORLP00000033975	Coagulation factor V; Belongs to the multicopper oxidase family.	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	0.890
LOC101166425	LOC101174928	ENSORLP00000030665	ENSORLP00000003708	Coagulation factor V; Belongs to the multicopper oxidase family.	Coagulation factor VIII, procoagulant component; Belongs to the multicopper oxidase family.	0.505
LOC101166425	stil	ENSORLP00000030665	ENSORLP00000017607	Coagulation factor V; Belongs to the multicopper oxidase family.	SERPIN domain-containing protein; Belongs to the serpin family.	0.638
LOC101170246	LOC101154762	ENSORLP00000033975	ENSORLP00000001424	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	Coagulation factor VII, like.	0.791
LOC101170246	LOC101164095	ENSORLP00000033975	ENSORLP00000010368	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	Uncharacterized protein.	0.812