STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101154762Coagulation factor VII, like. (429 aa)    
Predicted Functional Partners:
ggcx
Gamma-glutamyl carboxylase.
    
 0.814
stil
SERPIN domain-containing protein; Belongs to the serpin family.
   
 0.804
LOC101170246
Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.
   
 0.781
f3
Coagulation factor IIIa.
    
 0.779
LOC101164095
Uncharacterized protein.
    
 0.778
LOC101174546
Uncharacterized protein.
    
 0.772
LOC101174928
Coagulation factor VIII, procoagulant component; Belongs to the multicopper oxidase family.
   
 0.717
LOC101166425
Coagulation factor V; Belongs to the multicopper oxidase family.
   
 0.717
LOC101161149
Zgc:153031.
      
 0.655
serpind1
Serpin peptidase inhibitor, clade D (heparin cofactor), member 1; Belongs to the serpin family.
   
 0.634
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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