STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101165246Solute carrier family 22 member 5. (560 aa)    
Predicted Functional Partners:
slc7a2
Solute carrier family 7 member 2.
   
 
 0.628
zbtb20
Zinc finger and BTB domain containing 20.
    
 
 0.521
cacnb4
Calcium channel, voltage-dependent, beta 4a subunit.
      
 0.519
picalm
Phosphatidylinositol binding clathrin assembly protein b.
      
 0.513
nup35
Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family.
      
 0.513
LOC101162590
Synaptic vesicle glycoprotein 2Ba.
  
     0.488
ints9
Integrator complex subunit 9.
    
 0.486
ints1
DUF3677 domain-containing protein.
    
 0.472
ints7
Integrator complex subunit 7.
    
 0.465
ints4
Integrator complex subunit 4.
    
 0.456
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.