STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101165246Solute carrier family 22 member 5. (560 aa)    
Predicted Functional Partners:
slc7a2
Solute carrier family 7 member 2.
    
 
 0.686
cacnb4
Calcium channel, voltage-dependent, beta 4a subunit.
      
 0.613
picalm
Phosphatidylinositol binding clathrin assembly protein b.
      
 0.600
nup35
Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family.
      
 0.600
zbtb20
Zinc finger and BTB domain containing 20.
    
 
 0.515
LOC101162590
Synaptic vesicle glycoprotein 2Ba.
  
     0.488
ints9
Integrator complex subunit 9.
    
 0.464
pros1
Protein S.
   
 0.455
ints1
DUF3677 domain-containing protein.
    
 0.452
ints11
Integrator complex subunit 11.
    
 0.447
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.