Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101171800IRF-2BP1_2 domain-containing protein. (505 aa)    
Predicted Functional Partners:
irf2
Interferon regulatory factor.
    
 
 0.810
LOC101172901
Vestigial-like family member 4a.
    
 
 0.619
vgll4
Vestigial-like family member 4b.
    
 
 0.619
LOC101173369
Junction plakoglobin a.
    
 
 0.544
fosl2
Fos-like antigen 2.
    
   0.510
ccdc9
Coiled-coil domain containing 9.
   
  
 0.509
gtpbp1
GTP binding protein 1.
      
 0.492
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 
 0.459
LOC101156311
Eph receptor B2a.
      
 0.432
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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