LOC101162850 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC101162850

IF rod domain-containing protein. (383 aa)

Predicted Functional Partners:

bag3

0.667

prkn

0.517

ube2w

0.482

bag2

0.478

rps27a

0.448

uba52

0.445

H2M970_ORYLA

0.445

runx2

0.421

LOC101160370

0.421

LOC101167336

0.421

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2M970_ORYLA	LOC101160370	ENSORLP00000015051	ENSORLP00000021903	Ubiquitin-like domain-containing protein.	Runt-related transcription factor.	0.486
H2M970_ORYLA	LOC101162850	ENSORLP00000015051	ENSORLP00000001481	Ubiquitin-like domain-containing protein.	IF rod domain-containing protein.	0.445
H2M970_ORYLA	LOC101167336	ENSORLP00000015051	ENSORLP00000023233	Ubiquitin-like domain-containing protein.	Runt domain-containing protein.	0.478
H2M970_ORYLA	bag3	ENSORLP00000015051	ENSORLP00000036929	Ubiquitin-like domain-containing protein.	BCL2 associated athanogene 3.	0.453
H2M970_ORYLA	prkn	ENSORLP00000015051	ENSORLP00000045716	Ubiquitin-like domain-containing protein.	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.	0.893
H2M970_ORYLA	rps27a	ENSORLP00000015051	ENSORLP00000038189	Ubiquitin-like domain-containing protein.	Ribosomal protein S27a.	0.997
H2M970_ORYLA	runx2	ENSORLP00000015051	ENSORLP00000012748	Ubiquitin-like domain-containing protein.	Runt-related transcription factor.	0.486
H2M970_ORYLA	ube2w	ENSORLP00000015051	ENSORLP00000035969	Ubiquitin-like domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.716
LOC101160370	H2M970_ORYLA	ENSORLP00000021903	ENSORLP00000015051	Runt-related transcription factor.	Ubiquitin-like domain-containing protein.	0.486
LOC101160370	LOC101162850	ENSORLP00000021903	ENSORLP00000001481	Runt-related transcription factor.	IF rod domain-containing protein.	0.421
LOC101160370	rps27a	ENSORLP00000021903	ENSORLP00000038189	Runt-related transcription factor.	Ribosomal protein S27a.	0.580
LOC101160370	uba52	ENSORLP00000021903	ENSORLP00000010731	Runt-related transcription factor.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.486
LOC101162850	H2M970_ORYLA	ENSORLP00000001481	ENSORLP00000015051	IF rod domain-containing protein.	Ubiquitin-like domain-containing protein.	0.445
LOC101162850	LOC101160370	ENSORLP00000001481	ENSORLP00000021903	IF rod domain-containing protein.	Runt-related transcription factor.	0.421
LOC101162850	LOC101167336	ENSORLP00000001481	ENSORLP00000023233	IF rod domain-containing protein.	Runt domain-containing protein.	0.421
LOC101162850	bag2	ENSORLP00000001481	ENSORLP00000012665	IF rod domain-containing protein.	BCL2 associated athanogene 2.	0.478
LOC101162850	bag3	ENSORLP00000001481	ENSORLP00000036929	IF rod domain-containing protein.	BCL2 associated athanogene 3.	0.667
LOC101162850	prkn	ENSORLP00000001481	ENSORLP00000045716	IF rod domain-containing protein.	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.	0.517
LOC101162850	rps27a	ENSORLP00000001481	ENSORLP00000038189	IF rod domain-containing protein.	Ribosomal protein S27a.	0.448
LOC101162850	runx2	ENSORLP00000001481	ENSORLP00000012748	IF rod domain-containing protein.	Runt-related transcription factor.	0.421