STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101164991Solute carrier family 22 member 21. (589 aa)    
Predicted Functional Partners:
slc22a18
Solute carrier family 22 member 18.
   
 
 0.583
ttbk1
Tau tubulin kinase 1a.
      
 0.500
ints9
Integrator complex subunit 9.
    
 0.464
pros1
Protein S.
   
 0.455
ints1
DUF3677 domain-containing protein.
    
 0.452
ints11
Integrator complex subunit 11.
    
 0.447
slc16a9
Solute carrier family 16 member 9a.
    
 
 0.446
snx9
Sorting nexin.
      
 0.446
ints7
Integrator complex subunit 7.
    
 0.445
ints10
Integrator complex subunit 10.
    
 0.444
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.