Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101163660RRM domain-containing protein. (211 aa)    
Predicted Functional Partners:
nxf1
Zgc:153681.
   
 0.967
H2N0H8_ORYLA
RRM domain-containing protein.
   
 0.939
SRSF3
Serine and arginine rich splicing factor 3b.
   
 0.939
LOC101164733
Serine and arginine rich splicing factor 9.
   
 0.936
LOC101162697
Serine and arginine rich splicing factor 1a.
   
 0.935
LOC101171767
Uncharacterized protein.
   
 0.935
LOC101155211
Serine and arginine rich splicing factor 7a.
   
 0.931
ALYREF
Aly/REF export factor.
  
 0.916
zrsr2
Zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2.
   
 0.904
H2MT00_ORYLA
PWI domain-containing protein.
   
 0.882
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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