STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101163660RRM domain-containing protein. (211 aa)    
Predicted Functional Partners:
nxf1
Zgc:153681.
   
 0.952
LOC101171240
SRSF protein kinase 1b.
    
 0.932
H2N0H8_ORYLA
RRM domain-containing protein.
   
0.906
SRSF3
Serine and arginine rich splicing factor 3b.
   
0.906
LOC101164733
Serine and arginine rich splicing factor 9.
   
 0.887
LOC101162697
Serine and arginine rich splicing factor 1a.
   
0.877
LOC101171767
Uncharacterized protein.
   
0.877
LOC101155211
Serine and arginine rich splicing factor 7a.
   
0.873
ENSORLP00000034025
RRM domain-containing protein.
  
 0.832
tprg1l
Tumor protein p63 regulated 1-like.
   
 0.827
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.