Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
vax1Ventral anterior homeobox 1. (323 aa)    
Predicted Functional Partners:
ipo13
Importin 13.
    
 
 0.650
LOC101170553
NME/NM23 family member 8; Belongs to the NDK family.
    
   0.600
shh
Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.
    
 
 0.564
pax2
Paired box 2b.
    
 0.552
LOC101155219
Paired domain-containing protein.
    
 0.535
irf6
Interferon regulatory factor 6.
   
 0.523
LOC101164996
Fork-head domain-containing protein.
   
 0.514
foxg1
Fork-head domain-containing protein.
   
 0.514
atp6v1ba
Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.
      
 0.501
LOC100301613
Forkhead box G2.
   
 0.481
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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