STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101161885Si:ch211-220i18.4; Belongs to the protein kinase superfamily. (419 aa)    
Predicted Functional Partners:
u2af2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
    
 
 0.689
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
    
   0.665
srsf6
Serine and arginine rich splicing factor 6a.
   
 
 0.548
srsf5
Serine and arginine rich splicing factor 5a.
   
 
 0.541
H2M099_ORYLA
RRM domain-containing protein.
   
 
 0.541
ENSORLP00000034025
RRM domain-containing protein.
   
 
 0.541
LOC105357348
Serine and arginine rich splicing factor 5b.
   
 
 0.541
LOC101155103
Uncharacterized protein.
    
 
 0.490
LOC101167788
RNA binding motif protein 39b.
    
 
 0.490
znf318
U1-type domain-containing protein.
    
 
 0.483
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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