Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC101161885Si:ch211-220i18.4; Belongs to the protein kinase superfamily. (419 aa)    
Predicted Functional Partners:
u2af2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
    
 
 0.712
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
    
   0.608
LOC101155103
Uncharacterized protein.
    
 
 0.545
LOC101167788
RNA binding motif protein 39b.
    
 
 0.545
sf1
Splicing factor 1.
   
 
 0.509
LOC101157292
Si:dkey-8e10.3; Belongs to the protein kinase superfamily.
      
 0.498
prpf38a
Pre-mRNA processing factor 38A.
    
 
 0.490
LOC101162379
CDC-like kinase 2a.
   
 
 0.483
LOC101161565
CDC-like kinase 4a.
   
 
 0.483
LOC101158555
CDC-like kinase 2b; Belongs to the protein kinase superfamily.
   
 
 0.483
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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