STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tbceTubulin folding cofactor E. (520 aa)    
Predicted Functional Partners:
tbca
Tubulin-specific chaperone A; Belongs to the TBCA family.
    
 0.977
tbcd
Tubulin folding cofactor D.
    
 0.975
tbcb
Tubulin folding cofactor B.
    
 0.953
arl2
ADP-ribosylation factor-like 2; Belongs to the small GTPase superfamily. Arf family.
    
 
 0.935
Tbcc
Tubulin folding cofactor C.
    
 0.897
rp2
Protein XRP2; Acts as a GTPase-activating protein (GAP) for tubulin in concert with tubulin-specific chaperone C, but does not enhance tubulin heterodimerization.
    
 0.819
mad1l1
Mitotic arrest deficient 1 like 1.
    
   0.767
mad2l1
HORMA domain-containing protein.
    
   0.738
elac1
ElaC ribonuclease Z 1.
      
 0.711
vps54
VPS54 subunit of GARP complex.
      
 0.599
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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