Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sox6aHMG box domain-containing protein. (814 aa)    
Predicted Functional Partners:
sox5
HMG box domain-containing protein.
   
 
 0.940
ctnnb1
Catenin (cadherin-associated protein), beta 1.
   
 0.865
sox13
SRY-box transcription factor 13.
    
 
 0.703
trip12
Thyroid hormone receptor interactor 12.
    
 
 0.692
LOC101171502
Uncharacterized protein.
   
 0.673
LOC101173369
Junction plakoglobin a.
   
 0.673
TNNT1
Troponin T1, slow skeletal type.
   
  
 0.614
LOC101166305
Troponin T type 1 (skeletal, slow).
   
  
 0.614
dmy
Doublesex- and mab-3-related transcription factor 1; Transcription factor that acts both as a transcription.
    
 
 0.603
ppargc1a
Peroxisome proliferator-activated receptor gamma, coactivator 1 alpha.
   
  
 0.551
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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