STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sash3SAM and SH3 domain containing 3. (391 aa)    
Predicted Functional Partners:
ptprc
Protein tyrosine phosphatase receptor type C.
   
 
 0.572
LOC101155816
Rho-GAP domain-containing protein.
   
  
 0.547
ENSORLP00000029208
CAP-ZIP_m domain-containing protein.
   
  
 0.509
klhl6
Kelch-like family member 6.
   
  
 0.454
ENSORLP00000045941
Tetraspanin.
   
  
 0.445
LOC101164896
Uncharacterized protein.
   
 
  0.433
LOC101167047
Rho GTPase activating protein 25.
   
  
 0.418
themis2
Thymocyte selection associated family member 2.
   
  
 0.414
SHC3
SHC adaptor protein 3.
    
 0.410
shc1
SHC (Src homology 2 domain containing) transforming protein 1.
    
 0.410
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.