Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rfx5Regulatory factor X, 5. (660 aa)    
Predicted Functional Partners:
rfxank
Regulatory factor X-associated ankyrin-containing protein.
    
 
 0.996
rfxap
Regulatory factor X-associated protein.
    
 
 0.995
ENSORLP00000042692
Class II, major histocompatibility complex, transactivator.
    
 
 0.986
RFX7
Regulatory factor X7.
    
 
 0.906
ankra2
Ankyrin repeat, family A (RFXANK-like), 2.
    
 
 0.737
med23
Mediator complex subunit 23.
      
 0.734
ehf
Ets homologous factor.
      
 0.705
rreb1
Ras responsive element binding protein 1a.
    
 
 0.676
cryzl1
Crystallin, zeta (quinone reductase)-like 1.
      
 0.645
atr
ATR serine/threonine kinase; Belongs to the PI3/PI4-kinase family.
    
 
 0.644
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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