Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
trmt12tRNA methyltransferase 12 homolog. (396 aa)    
Predicted Functional Partners:
trmt112
tRNA methyltransferase subunit 11-2.
   
 
 0.912
yrdc
YrdC N(6)-threonylcarbamoyltransferase domain containing.
   
  
 0.895
dus1l
Dihydrouridine synthase 1-like (S. cerevisiae).
   
  
 0.895
trit1
tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37; Belongs to the IPP transferase family.
   
  
 0.884
trmu
tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase.
   
  
 0.876
tyw5
tRNA-yW synthesizing protein 5.
 
    
 0.822
tyw3
tRNA-yW synthesizing protein 3 homolog (S. cerevisiae).
  
 
 0.814
trmt11
tRNA methyltransferase 11 homolog.
   
  
 0.791
trmt10c
tRNA methyltransferase 10C, mitochondrial RNase P subunit.
   
  
 0.790
trub2
TruB pseudouridine (psi) synthase family member 2.
   
  
 0.764
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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