STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uroc1Urocanate hydratase 1. (997 aa)    
Predicted Functional Partners:
hal
Histidine ammonia-lyase; Belongs to the PAL/histidase family.
 
 
 0.986
amdhd1
Amidohydrolase domain containing 1.
  
 
 0.981
bcap31
B cell receptor associated protein 31.
      
 0.827
ftcd
Formimidoyltransferase cyclodeaminase.
  
  
 0.764
myadml2
Myeloid-associated differentiation marker-like 2.
      
 0.639
pycr3
Pyrroline-5-carboxylate reductase; Belongs to the pyrroline-5-carboxylate reductase family.
      
 0.636
agmat
Agmatine ureohydrolase (agmatinase); Belongs to the arginase family.
   
  
 0.604
wdr5
WD repeat domain 5.
    
  0.585
fbxo38
F-box protein 38.
    
 
 0.528
uhrf1
Ubiquitin-like with PHD and ring finger domains 1.
    
 0.506
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.