STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nr1h3Nuclear receptor subfamily 1, group H, member 3. (462 aa)    
Predicted Functional Partners:
rxra
Retinoid X receptor, alpha a.
   
 0.940
LOC100125506
Retinoid x receptor, beta b.
   
 0.922
LOC100125533
Uncharacterized protein.
   
 0.922
RXRB
Uncharacterized protein.
   
 0.922
pparg
Uncharacterized protein.
    
 0.913
LOC101156001
Lipase; Belongs to the AB hydrolase superfamily. Lipase family.
     
 0.912
ncor1
Nuclear receptor corepressor 1.
    
 0.895
ncor2
Nuclear receptor corepressor 2.
    
 0.895
LOC101175434
Nuclear receptor coactivator.
    
 0.868
ncoa2
Nuclear receptor coactivator.
    
 0.868
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.