STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101174288Cadherin 5; Cadherins are calcium-dependent cell adhesion proteins. (781 aa)    
Predicted Functional Partners:
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.987
LOC101173369
Junction plakoglobin a.
    
 0.967
LOC101171502
Uncharacterized protein.
    
 0.922
ctnna1
Catenin (cadherin-associated protein), alpha 1.
    
 0.861
ctnna2
Catenin (cadherin-associated protein), alpha 2.
    
 0.861
LOC101161503
Uncharacterized protein.
    
 0.861
LOC101159590
Platelet/endothelial cell adhesion molecule 1.
   
 0.826
cdh17
Cadherin 17, LI cadherin (liver-intestine).
     
0.807
cdh16
Cadherin 16, KSP-cadherin.
     
0.790
LOC101170569
Uncharacterized protein.
    
 0.783
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.