STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101162596Si:dkey-10o6.2; Belongs to the iron/ascorbate-dependent oxidoreductase family. (308 aa)    
Predicted Functional Partners:
aasdh
Aminoadipate-semialdehyde dehydrogenase.
   
 
 0.903
ulk1
Unc-51 like autophagy activating kinase 1.
    
 
 0.493
LOC101167046
Unc-51 like autophagy activating kinase 1a.
    
 
 0.493
LOC101172961
Serine/threonine kinase 35; Belongs to the protein kinase superfamily.
    
 
 0.493
ulk3
Unc-51 like kinase 3; Belongs to the protein kinase superfamily.
    
 
 0.493
pdik1l
PDLIM1 interacting kinase 1 like; Belongs to the protein kinase superfamily.
    
 
 0.493
LOC101160680
Unc-51 like autophagy activating kinase 2.
    
 
 0.493
LOC101161023
Si:ch211-63o20.7; Belongs to the protein kinase superfamily.
    
 
 0.493
trit1
tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37; Belongs to the IPP transferase family.
   
  
 0.482
LOC101170716
Carrier domain-containing protein.
    
 0.432
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.