STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101162596Si:dkey-10o6.2; Belongs to the iron/ascorbate-dependent oxidoreductase family. (308 aa)    
Predicted Functional Partners:
aasdh
Aminoadipate-semialdehyde dehydrogenase.
     
 0.789
atg5
Autophagy protein 5; Involved in autophagic vesicle formation.
    
 
 0.524
LOC101157953
Proteasome 26S subunit, non-ATPase 4a.
    
 
 0.506
LOC101173089
Proteasome 26S subunit, non-ATPase 4b.
    
 
 0.506
LOC101171004
RPN13_C domain-containing protein.
    
 
 0.506
LOC101175629
Adhesion regulating molecule 1.
    
 
 0.506
pgap1
GPI inositol-deacylase; Involved in inositol deacylation of GPI-anchored proteins. GPI inositol deacylation may important for efficient transport of GPI- anchored proteins from the endoplasmic reticulum to the Golgi.
    
   0.457
LOC101170716
Carrier domain-containing protein.
    
 0.436
LOC101169644
Si:dkey-61p9.11.
    
 0.436
olpks
Carrier domain-containing protein.
    
 0.436
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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