STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLASP1Uncharacterized protein. (1611 aa)    
Predicted Functional Partners:
clip1
CAP-GLY domain containing linker protein 1a.
    
 
 0.868
LOC101162870
Dynactin 1a.
   
 
 0.849
LOC101166919
Dynactin 1b.
   
 
 0.849
trim36
Tripartite motif containing 36.
    
 
 0.826
nudc
NudC nuclear distribution protein.
     
 0.724
bub3
BUB3 mitotic checkpoint protein.
    
 0.676
mapre1
Microtubule-associated protein, RP/EB family, member 1b.
    
 
 0.616
cdc20
WD_REPEATS_REGION domain-containing protein.
     
 0.588
cdc20b
WD_REPEATS_REGION domain-containing protein.
     
 0.588
nudcd3
NudC domain containing 3.
     
 0.586
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (16%) [HD]