STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H4C7Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (158 aa)    
Predicted Functional Partners:
H2L503_ORYLA
Histone H3; Belongs to the histone H3 family.
 
 
 0.812
ENSORLP00000041905
Histone H3; Belongs to the histone H3 family.
 
 
 0.812
H3-3B
Histone H3; Belongs to the histone H3 family.
 
 
 0.811
H2L6K8_ORYLA
Histone H3; Belongs to the histone H3 family.
 
 
 0.811
LOC101159638
Histone H3; Belongs to the histone H3 family.
 
 
 0.811
H2LD49_ORYLA
Histone H3; Belongs to the histone H3 family.
 
 
 0.811
ENSORLP00000043059
Histone H3; Belongs to the histone H3 family.
 
 
 0.811
H2L5L2_ORYLA
Histone H3; Belongs to the histone H3 family.
 
 
 0.809
hat1
Histone acetyltransferase type B catalytic subunit; Acetylates soluble but not nucleosomal histone H4 at 'Lys-5' (H4K5ac) and 'Lys-12' (H4K12ac) and, to a lesser extent, acetylates histone H2A at 'Lys-5' (H2AK5ac). Has intrinsic substrate specificity that modifies lysine in recognition sequence GXGKXG.
    
 0.808
MSL3
MSL complex subunit 3.
    
 0.808
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.