STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhbdd1Rhomboid domain containing 1. (316 aa)    
Predicted Functional Partners:
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
    
 
 0.895
sae1
SUMO1 activating enzyme subunit 1.
      
 0.841
AHNAK
AHNAK nucleoprotein.
    
 
 0.823
ccnd1
Cyclin D1; Belongs to the cyclin family.
      
 0.806
spata5l1
Spermatogenesis associated 5-like 1.
    
 
 0.712
klhl31
Kelch-like family member 31.
      
 0.610
tmem214
Transmembrane protein 214.
      
 0.560
tmem38a
Transmembrane protein 38A.
      
 0.559
tmem70
Transmembrane protein 70.
      
 0.559
cdca3
Si:ch211-69g19.2.
      
 0.501
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.