Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cfap70Uncharacterized protein. (1054 aa)    
Predicted Functional Partners:
LOC101155262
Trafficking protein, kinesin binding 2.
    
 0.813
myo19
Myosin XIX; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
 0.809
prkn
E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.
    
 0.762
cfap58
Cilia and flagella associated protein 58.
   
  
 0.745
H2LLY6_ORYLA
HAP1 N-terminal domain-containing protein.
    
 0.731
trak1
Trafficking protein, kinesin binding 1a.
    
 0.731
LOC101173611
Si:dkey-28e7.3.
    
 0.731
Wdr90
WD_REPEATS_REGION domain-containing protein.
 
 
 0.702
tomm70
Translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae).
   
 0.690
ENSORLP00000042816
Uncharacterized protein.
 
 
 0.679
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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