STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aff4AF4/FMR2 family, member 4. (1117 aa)    
Predicted Functional Partners:
cdk9
Cyclin-dependent kinase 9 (CDC2-related kinase); Belongs to the protein kinase superfamily.
    
 0.981
LOC101157196
Cyclin T2b; Belongs to the cyclin family.
   
 0.973
ccnt2
Cyclin T2; Belongs to the cyclin family.
   
 0.973
ccnt1
Cyclin T1; Belongs to the cyclin family.
   
 0.963
LOC101154988
ELL associated factor 2.
    
 0.960
ell2
Elongation factor, RNA polymerase II, 2.
   
 0.956
eaf1
ELL associated factor 1.
    
 0.953
ell
Elongation factor RNA polymerase II.
   
 0.941
LOC101159914
Si:ch211-13k12.2.
   
 0.933
LOC101155504
Uncharacterized protein.
   
 0.933
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.