Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gata2Transcription factor GATA-2. (455 aa)    
Predicted Functional Partners:
spi1
Spi-1 proto-oncogene b.
    
 0.869
LOC101174459
T-cell acute lymphocytic leukemia 1.
   
 0.866
zfpm1
Zinc finger protein, FOG family member 1.
    
 0.848
lmo2
LIM domain only 2 (rhombotin-like 1).
    
 0.844
LOC101173202
RUNX family transcription factor 1.
    
 0.843
H2MFW7_ORYLA
BHLH domain-containing protein.
   
 0.804
Glrx3
Glutaredoxin 3.
    
 
 0.789
myb
Uncharacterized protein.
   
 0.762
LOC101162780
LIM domain binding 1a.
    
 0.709
LOC101158085
LIM-domain binding 1b.
    
 0.709
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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