Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H2L780_ORYLAPH domain-containing protein. (564 aa)    
Predicted Functional Partners:
rai14
Retinoic acid induced 14.
   
 0.537
pjvk
Pejvakin.
     
 0.528
tmco1
Calcium load-activated calcium channel; Calcium-selective channel required to prevent calcium stores from overfilling.
      
 0.498
LOC101163926
TACC_C domain-containing protein.
      
 0.464
LOC101156486
Ankyrin repeat domain 24.
   
 0.428
H2MBY2_ORYLA
Uncharacterized protein.
   
 
 0.412
ENSORLP00000035247
Uncharacterized protein.
   
 
 0.412
ENSORLP00000035524
Uncharacterized protein.
   
 
 0.412
il17rc
SEFIR domain-containing protein.
      
 0.408
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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