Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC101167978Lunapark, ER junction formation factor. (409 aa)    
Predicted Functional Partners:
mtx2
Metaxin 2.
      
 0.656
LOC101170803
Receptor expression-enhancing protein.
    
 
 0.629
LOC101164298
Receptor expression-enhancing protein.
    
 
 0.629
pdzd8
PDZ domain containing 8.
      
 0.569
sec63
SEC63 homolog, protein translocation regulator.
    
 
 0.552
copa
Coatomer subunit alpha; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network.
    
   0.475
LOC101172920
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 
 0.475
CUL3
Cullin 3; Belongs to the cullin family.
    
 
 0.475
ubc
Ubiquitin B.
    
   0.464
sec61b
Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.
      
 0.464
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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